BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005C01LP1|AL425342
(412 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1747 199 5e-51
>3x_Contig1747
Length = 15671
Score = 199 bits (97), Expect = 5e-51
Identities = 187/220 (85%), Gaps = 5/220 (2%)
Strand = Plus / Plus
Query: 21 ttctagagtgttagccagactcttatacgatggcgagtcgaamagmagtatcgttcagcc 80
||||||||||||||| ||| |||||||||||||||||||||| || ||||||||| |||
Sbjct: 5422 ttctagagtgttagcaagattcttatacgatggcgagtcgaaaagaagtatcgttaagca 5481
Query: 81 aattccymtcttgattcamcaattagaatactttmtacmgatagaaatcrcgaa-ctgaa 139
|||||| |||||||||| ||||||| ||||||| ||| | |||||| |||| ||| |
Sbjct: 5482 aattcctatcttgattcaacaattag-atactttatacag--tgaaatcgcgaagctg-a 5537
Query: 140 aawcatacagattgwmcggctcatctttgcccttattttacgattgcgaccacccacaca 199
|| ||||||||||| ||| |||||||||| ||||||||||||| ||||| |||| || |
Sbjct: 5538 aatcatacagattgtacggatcatctttgctcttattttacgatggcgacaaccctcaga 5597
Query: 200 ccaaacgacctcgggtgacggaaaacattatagcyttcgc 239
||||||| ||||||||| || ||||||||||| |||||
Sbjct: 5598 acaaacgatctcgggtgaaggtaaacattatagatttcgc 5637
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.42 0.718 1.34
Gapped
Lambda K H
1.42 0.718 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 749
Number of Sequences: 1807
Number of extensions: 749
Number of successful extensions: 19
Number of sequences better than 1.0e-20: 1
length of query: 412
length of database: 10,358,551
effective HSP length: 15
effective length of query: 397
effective length of database: 10,331,446
effective search space: 4101584062
effective search space used: 4101584062
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.7 bits)
S1: 11 (23.0 bits)
S2: 48 (98.7 bits)